An Example of Animated xyz files for the PHBH hydroxylation reaction

To see the script which runs these commands, view the page source in your browser.


Highlight the flavin cofactor
Highlight the substrate
Highlight both substrate and flavin cofactor
Highlight the transferring OH group
Show animation of the reaction

Zoom in to view active site
Zoom out to full view

Show the transition state

Highlight active site interactions:
Tyrosine 201
Proline 293
Water

Return molecule to starting point.

[Animation created by Lars Ridder of Bristol University to illustrate the calculations given in 7-9].